Quetzal-CoaTL
The Coalescence Template Library
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coalescence.hpp
1// Copyright 2021 Arnaud Becheler <abechele@umich.edu>
2
3/*********************************************************************** * This program is free software; you can
4 *redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free
5 *Software Foundation; either version 2 of the License, or * (at your option) any later version. *
6 * *
7 ***************************************************************************/
8
9#include "coalescence/container/Forest.hpp"
10#include "coalescence/container/Network.hpp"
11#include "coalescence/container/Tree.hpp"
12
13#include "coalescence/graph/binary_tree.hpp"
14#include "coalescence/graph/k_ary_tree.hpp"
15
16#include "coalescence/merger_policy.hpp"
17#include "coalescence/occupancy_spectrum.hpp"
18#include "coalescence/policies/distance_to_parent.hpp"
19
20namespace quetzal
21{
25namespace coalescence
26{
30namespace algorithm
31{
32}
36namespace container
37{
38}
43namespace occupancy_spectrum
44{
48namespace filter_policy
49{
50}
54namespace spectrum_editor
55{
56}
60namespace sampling_policy
61{
62}
66namespace memoize
67{
68}
69} // namespace occupancy_spectrum
70} // namespace coalescence
71} // namespace quetzal
const ProbabilityDistribution< FilterPolicy, EditorPolicy > & memoize(int k, int N)
Store on RAM the entire distributions of occupancy spectrums for every pair and .
Definition memoize.hpp:53
Simulation of coalescence-based models of molecular evolution.
Definition coalescence.hpp:21