#include <quetzal/simulator/DiscreteTimeWrightFisher.hpp>

Detailed Description

Discrete time simulation in a Wright-Fisher Population.

Remarks: All methods are static. Use on-the-fly policy.

This simulator consists in a backward coalescent simulation that traces back the ancestry of a sample of gene copies sampled in a populations. Either the user wants to perform generation-by-generation coalescence during a given number of generations (leading to a Forest of coalescent trees rather a single genealogy), or the user would be interested in coalescing lineages until MRCA has been found.

Public Types
template<typename Space , typename Tree >
using	forest_type = quetzal::coalescence::container::Forest< Space, Tree >

Static Public Member Functions
template<typename Space , typename Tree , typename Generator , typename Binop , typename TimeFun >
static Tree	coalesce (forest_type< Space, Tree > const &forest, unsigned int N, Generator &gen, Binop branch, TimeFun make_tree)

template<typename Generator >
static unsigned int	sample_waiting_time (unsigned int k, unsigned int N, Generator &gen)

template<typename Tree , typename Generator , typename Binop , typename TimeFun >
static Tree	coalesce (std::vector< Tree > &trees, unsigned int N, Generator &gen, Binop branch, TimeFun make_tree)

template<typename MergerType = coalescence::merger_policy::SimultaneousMultipleMerger< coalescence::occupancy_spectrum::sampling_policy::on_the_fly>, typename Tree , typename Generator , typename Binop , typename TimeFun >
static std::vector< Tree >	coalesce (std::vector< Tree > &trees, unsigned int N, unsigned int g, Generator &gen, Binop branch, TimeFun make_tree)

The documentation for this class was generated from the following file:

/home/runner/work/quetzal-CoaTL/quetzal-CoaTL/src/include/quetzal/simulator/DiscreteTimeWrightFisher.hpp

Detailed Description

Public Types

Static Public Member Functions