Tutorials

Input/Output

• Tree Format
  • Parsing a Newick string
  • Generating a Newick string
• Network Format
  • Parsing an Extended Newick string
  • Generating an Extended Newick string
• Geospatial Formats
  • Reading spatial variables from rasters
  • Writing spatial variables to rasters
  • Writing spatial samples to shapefile

Demographic Histories

• Demographic Histories in Quetzal
• Phylogenetic Trees
• Phylogenetic Networks
• Spatial Graphs
  • Construction
  • Embedding vertex/edge information
  • Local Parameters
  • Autoregressive processes and time series
  • Dispersal on a spatial graph
  • Memory Management

Graphs

• Graphs in Quetzal
• Coalescence
  • Binary Trees
  • K-ary Trees
  • network